The American Journal of Pathology
Volume 180, Issue 2 , Pages 446-456, February 2012

Age-Dependent Changes in the Cerebrospinal Fluid Proteome by Slow Off-Rate Modified Aptamer Array

  • Geoffrey S. Baird

      Affiliations

    • Department of Laboratory Medicine, University of Washington, Seattle, Washington
    • Department of Pathology, University of Washington, Seattle, Washington
    • Corresponding Author InformationAddress reprint requests to Geoffrey S. Baird, M.D., Ph.D., Department of Laboratory Medicine, University of Washington, Harborview Medical Center, Box 359743, 325 9th Avenue, Seattle, WA 98105
  • ,
  • Sally K. Nelson

      Affiliations

    • SomaLogic, Inc., Boulder, Colorado
  • ,
  • Tracy R. Keeney

      Affiliations

    • SomaLogic, Inc., Boulder, Colorado
  • ,
  • Alex Stewart

      Affiliations

    • SomaLogic, Inc., Boulder, Colorado
  • ,
  • Stephen Williams

      Affiliations

    • SomaLogic, Inc., Boulder, Colorado
  • ,
  • Stephan Kraemer

      Affiliations

    • SomaLogic, Inc., Boulder, Colorado
  • ,
  • Elaine R. Peskind

      Affiliations

    • VA Northwest Network Mental Illness Research, Education, and Clinical Center, VA Puget Sound Health Care System, Seattle, Washington
    • Department of Psychiatry and Behavioral Sciences, University of Washington School of Medicine, Seattle, Washington
  • ,
  • Thomas J. Montine

      Affiliations

    • Department of Pathology, University of Washington, Seattle, Washington

Accepted 13 October 2011. published online 28 November 2011.

An important precondition for the successful development of diagnostic assays of cerebrospinal fluid (CSF) biomarkers of age-related neurodegenerative diseases is an understanding of the dynamic nature of the CSF proteome during the normal aging process. In this study, a novel proteomic technology was used to quantify hundreds of proteins simultaneously in the CSF from 90 cognitively normal adults 21 to 85 years of age. SomaLogic's highly multiplexed proteomic platform can measure more than 800 proteins simultaneously from small volumes of biological fluids using novel slow off-rate modified aptamer (SOMAmer) protein affinity reagents with sensitivity, specificity, and dynamic ranges that meet or exceed those of enzyme-linked immunosorbent assays. In the first application of this technology to CSF, we detected 248 proteins that possessed signals greater than twofold over background. Several novel correlations between detected protein concentrations and age were discovered that indicate that both inflammation and response to injury in the central nervous system may increase with age. Applying this powerful proteomic approach to CSF provides potential new insight into the aging of the human central nervous system that may have utility in discovering new disease-related changes in the CSF proteome.

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 Supported by funding from SomaLogic, Inc., the Nancy and Buster Alvord Endowment, the Department of Veterans Affairs, an anonymous foundation, and NIH grant AG05136.

 Disclosures: G.S.B. received research support from SomaLogic, Inc. S.K.N., T.R.K., A.S., S.W., and S.K. are employees of SomaLogic, Inc., and the assays reported in this manuscript were performed using reagents supplied by SomaLogic, Inc. None of the other authors disclosed any conflicts of interest.

 Supplemental material for this article can be found at http://ajp.amjpathol.org or at doi: 10.1016/j.ajpath.2011.10.024.

PII: S0002-9440(11)01014-5

doi:10.1016/j.ajpath.2011.10.024

The American Journal of Pathology
Volume 180, Issue 2 , Pages 446-456, February 2012